| 1961 | Ouvertüre Nr. 2 In H-moll, BWV 1067 / Ouvertüre Nr. 3 In D-dur, BWV 1068 | Johann Sebastian Bach; Aurèle Nicolet, Münchener Bach‐Orchester, Karl Richter | | 1 |
| 1983 | J. S. Bach, Sonatas For Flute And Harpsichord Obligato | Aurèle Nicolet & Michio Kobayashi | | 1 |
| 1984 | 6 Sonatas for Flute & Continuo | Handel; Aurèle Nicolet, Christiane Jaccottet, Mari Fujiwara | | 1 |
| 1984 | 4 Flute Quartets | W.A. Mozart; Aurèle Nicolet, Jean‐Jacques Kantorow, Vladimir Mendelssohn, Mari Fujiwara | | 1 |
| 1985 | Flute Concertos | Nielsen, Reinecke, Busoni; Aurèle Nicolet, Gewandhausorchester Leipzig, Kurt Masur | | 3 |
| 1985 | Suites for Violoncello Solo Arranged for Flute Solo | Johann Sebastian Bach; Aurèle Nicolet | | 1 |
| 1986 | Concertos for Flute and Oboe | Salieri, Cimarosa, Stamitz; Aurèle Nicolet, Heinz Holliger, Academy of St Martin in the Fields, Kenneth Sillito | | 1 |
| 1987 | 6 Flute Concertos, op. 10 | Vivaldi; I Musici, Aurèle Nicolet | 5 | 2 |
| 1988 | Flöten-Sonaten | Johann Sebastian Bach, Aurèle Nicolet; Karl Richter | | 1 |
| 1988 | Concerts Royaux | François Couperin ; Thomas Brandis, Heinz Holliger, Aurèle Nicolet, Josef Ulsamer, Christiane Nicolet, Manfred Sax & Christiane Jaccottet | | 1 |
| 1988 | Harfenkonzerte | Louis Spohr, Wolfgang Amadeus Mozart; Christoph Poppen, Ursula Holliger, Aurèle Nicolet, English Chamber Orchestra, Heinz Holliger | | 1 |
| 1988 | Stradivari: Soundtrack From the Film | Georg Philipp Telemann, Henry Purcell, Antonio Vivaldi, Johann Pachelbel, George Frideric Handel, Marco Uccellini, Tomaso Vitali, Anon., Salvatore Accardo,Pina Carmirelli, Franco Tamponi, Alfonso Ghedin, Francesco Strano, Aurèle Nicolet, William Bennett, Michala Petri, Heinz Holliger, Klaus Thunemann, Hermann Baumann, Timothy Brown, Celin Romero, Andrea Damian, Rinaldo Alessandrini, I Musici, English Chamber Orchestra, Raymond Leppard, Academy of St Martin-in-the-Fields, Iona Brown, Sir Neville Marriner, Saint Paul Chamber Orchestra, Layton James, Pinchas Zukerman & Orchestra Unione Musicisti Romani | | 1 |
| 1989 | Les Goûts-Réunis Ou Nouveaux Concerts | François Couperin; Brandis, Holliger, Nicolet, Ulsamer, Strehl, Sax, Jaccottet | | 2 |
| 1989 | Flute Concertos | Mozart; Royal Concertgebouw Orchestra Amsterdam, David Zinman, Aurèle Nicolet | | 1 |
| 1990 | Melodien / Double Concerto / Chamber Concerto | Ligeti; Nicolet, Holliger, London Sinfonietta, David Atherton | 5 | 1 |
| 1990 | Serenade KV 320 "Posthorn" / 2 Marches KV 335 | Mozart; Camerata Academica, Nicolet, Holliger, Thunemann, Sándor Végh | | 1 |
| 1994 | Flötenkonzerte des Barock | Vivaldi, Pergolesi, Blavet, Leclair, Woodcock; Aurèle Nicolet, Hans-Martin Linde | | 1 |
| 1995 | Mozart: Concertos for Flute and Orchestra nos. 1 & 2 / Andante in C major / Concerto for Flute, Harp and Orchestra / Haydn: Concerto for Flute / Gluck: Reigen seliger geister | Wolfgang Amadeus Mozart, Joseph Haydn, Christoph Willibald Gluck; Aurèle Nicolet, Münchener Bach-Orchester, Karl Richter | | 2 |
| 1997 | Oktett / Variationen "Trockne Blumen" | Schubert; Wiener Kammerensemble, Aurèle Nicolet, Karl Engel | | 1 |
| 2000 | Konzert in Sanssouci: Musik am preußischen Königshof | Hans-Martin Linde, Aurèle Nicolet, Schola Cantorum Basiliensis, Kammerorchester Emil Seiler, Festival Strings Lucerne | | 1 |
| 2017 | Flute Quartets | Mozart; Aurèle Nicolet, Ana Chumachenco, Oscar Lysy, Walter Nothas | | 2 |
| — | Overtures nos. 1 & 2 | J. S. Bach; Camerata Bern, Aurèle Nicolet | | 1 |
| — | The Complete Sonatas for Flute | J.S. Bach; Aurèle Nicolet | | 1 |
| — | Trio Sonatas | J.S. Bach, C.P.E. Bach; Aurèle Nicolet, Heinz Holliger, Christiane Jaccottet, Manfred Sax, Angela Schwartz | | 1 |
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