| 1977 | Satie i høj sø | Henning Christiansen; Per Johansen, Michala Petri, David Petri, Hanne Petri | | 2 |
| 1982 | Sonatas for Recorder and Continuo | George Frideric Handel; Michala Petri, Academy of St Martin in the Fields Chamber Ensemble | | 1 |
| 1983 | Brandenburg Concertos nos. 1, 2 & 3 | Johann Sebastian Bach; Henryk Szeryng, Heinz Holliger, Carl Pini, Michala Petri, Academy of St Martin in the Fields, Sir Neville Marriner | | 1 |
| 1983 | Händel, Babell, Baston: Recorder Concertos / Jacob: Suite for Recorder | Händel, Babell, Baston, Jacob; Michala Petri, Academy of St. Martin-in-the-Fields, Kenneth Sillito | | 2 |
| 1984 | Concerti da camera | Vivaldi; Michala Petri, Heinz Holliger, Felix Ayo, Klaus Thunemann, Pasquale Pellegrino, Christiane Jaccottet, Thomas Demenga, Jonathan Rubin | | 1 |
| 1985 | Italian Recorder Sonatas | Vivaldi, Corelli, Marcello, Bigaglia, Bononcini, Sammartini; Michala Petri, George Malcolm | | 1 |
| 1986 | German Recorder Sonatas | Bach, Handel & Telemann;Michala Petri & George Malcolm | | 1 |
| 1987 | The Four Seasons | Antonio Vivaldi; Michala Petri, George Malcolm, Guildhall String Ensemble | 5 | 1 |
| 1988 | Stradivari: Soundtrack From the Film | Georg Philipp Telemann, Henry Purcell, Antonio Vivaldi, Johann Pachelbel, George Frideric Handel, Marco Uccellini, Tomaso Vitali, Anon., Salvatore Accardo,Pina Carmirelli, Franco Tamponi, Alfonso Ghedin, Francesco Strano, Aurèle Nicolet, William Bennett, Michala Petri, Heinz Holliger, Klaus Thunemann, Hermann Baumann, Timothy Brown, Celin Romero, Andrea Damian, Rinaldo Alessandrini, I Musici, English Chamber Orchestra, Raymond Leppard, Academy of St Martin-in-the-Fields, Iona Brown, Sir Neville Marriner, Saint Paul Chamber Orchestra, Layton James, Pinchas Zukerman & Orchestra Unione Musicisti Romani | | 1 |
| 1988 | The Modern Recorder | Michala Petri, Hanne Petri, David Petri | | 1 |
| 1988 | The Virtuoso Recorder | Michala Petri | 5 | 2 |
| 1988 | Two Recorder Concerti / Recorder Suite | Georg Philipp Telemann; Michala Petri, Klaus Thunemann, William Bennett, Academy of St Martin in the Fields, Iona Brown | | 2 |
| 1989 | Recorder Concertos | Vivaldi, Telemann, Marcello, Naudot; Michala Petri, Academy of St.-Martin-in-the-Fields, Kenneth Sillito | | 1 |
| 1989 | Recorder Concertos | Antonio Vivaldi, Giuseppe Baldassare Sammartini, Georg Philipp Telemann, George Frideric Handel; Michala Petri, Academy of St Martin in the Fields, Iona Brown | | 2 |
| 1990 | 6 Concertos | Antonio Vivaldi; Michala Petri, I Solisti Veneti, Claudio Scimone | | 1 |
| 1990 | 8 Concertos | Michala Petri, I Solisti Veneti, Claudio Scimone,Tomaso Giovanni Albinoni | | 1 |
| 1990 | Concerti for Recorder, op. 10 | Antonio Vivaldi; Michala Petri, Academy of St Martin-in-the-Fields, Iona Brown | | 2 |
| 1991 | Recorder Sonatas | Georg Friedrich Händel; Michala Petri, Keith Jarrett | | 4 |
| 1992 | Bach Sonatas | Bach; Michala Petri, Keith Jarrett | | 2 |
| 1992 | Peace on Earth: A Bavarian Christmas | James Galway, Michala Petri, Nathalie Stutzmann, Guy Touvron, Francisco Araiza, Enoch zu Guttenberg | | 1 |
| 1993 | Holberg Suite, Melodies & Dances | Edvard Grieg; Michala Petri, English Chamber Orchestra, Okko Kamu | | 1 |
| 1994 | Souvenir: Music for Recorder & Lute/Guitar | Michala Petri, Lars Hannibal | | 1 |
| 1995 | Moonchild’s Dream | Michala Petri, English Chamber Orchestra, Okko Kamu | | 1 |
| 1997 | Air: Works for recorder and guitar | Michala Petri, Lars Hannibal | | 1 |
| 2000 | Recorder Favourites | Michala Petri, Hanne Petri, David Petri | | 1 |
| 2001 | Kreisler Inspirations | Michala Petri, Lars Hannibal | | 1 |
| 2007 | Movements | Michala Petri, Danish National Symphony Orchestra / DR, Lan Shui | | 1 |
| 2008 | Christmas With Michala Petri | Michala Petri, Danish Radio Sinfonietta, Henrik Vagn Christensen | | 1 |
| 2008 | Flute Quartets Nos. 1–4 | Mozart; Carolin Widmann, Michala Petri, Ula Ulijona, Marta Sudraba | | 1 |
| 2011 | Virtuoso Baroque | Michala Petri, Lars Hannibal | | 2 |
| 2013 | Going to Pieces Without Falling Apart | Palle Mikkelborg; Michala Petri, Helen Davies, South Jutland Symphony Orchestra, Henrik Vagn Christensen | | 1 |
| 2015 | La Follia | Corelli; Michala Petri, Mahan Esfahani | | 1 |
| 2017 | Garden Party | Michala Petri, Lars Hannibal | | 1 |
| 2017 | Brazilian Landscapes | Michala Petri, Marilyn Mazur, Daniel Murray | | 1 |
| 2019 | American Recorder Concertos | Roberto Sierra, Steven Stucky, Anthony Newman, Sean Hickey; Michala Petri | | 2 |
| 2020 | Your Voice Out of the Lamb / Four Lessons of Darkness / Dogmatic Pleasures | Fabrice Bollon; Michala Petri, Per Salo, Michaela Fukačová, Johannes Moser, Odense Symphony Orchestra, Philharmonisches Orchester Freiburg, Deutsche Radio Philharmonie, Christoph Poppen, Nicholas Milton, Jader Bignamini | | 1 |
| 2020 | Blue | Lars Hannibal, Michala Petri, Agnete Hannibal Petri, Amalie Hannibal Petri | | 3 |
| 2023 | Corellimania | Michala Petri, Hille Perl & Mahan Esfahani | | 1 |
| 2025 | On a Ground | Michala Petri, Marie Nishiyama | | 1 |
| — | Blockflötensonaten des Barock | Bach, Händel, Telemann, Corelli, Marcello, Vivaldi; Michala Petri, George Malcolm, Graham Sheen | | 1 |
| — | Café Vienna | Michala Petri & Lars Hannibal | | 1 |
| — | Scandinavian Moods | Michala Petri | | 1 |
| — | Suite in A minor / 2 Double Concertos | Telemann; Michala Petri, Academy of St Martin in the Fields, Iona Brown | | 2 |
| — | Virtuoso Recorder Concertos | Michala Petri | | 1 |